An open-access resource that integrates transcriptomic and proteomic data from diverse clinical cohorts, adipose cell types, and adipocyte studies to enable new discoveries in adipose biology.

Data Sharing, Policy Support, and Services for researchers in Swedish medical imaging AI.

Contains over 200 million predictions of 3D protein structures based on amino acid sequence. The predictions were generated using AlphaFold, an AI system developed by DeepMind.

The AMR Portal is a collaboration between EMBL-EBI research and service teams alongside Imperial College London to deliver a new way to access and explore AMR phenotype and genotype annotations through a user-friendly interface.

The largest database for standardised bacterial phenotypic data. It includes >600 data fields, e.g. taxonomy, molecular data, and morphology. Integrates data from many sources & makes it freely accessible.

A biobanking infrastructure that promotes biomedical research. Samples can be accessed with appropriate permissions. Services, software, tools, and support with ELSI are also available.

BRC Analytics provides curated pathogen, host, and vector genomic data, supports user-uploaded sequencing data, and enables browser-based workflows for RNA-seq, genome annotation, comparative genomics, and other analyses using scalable cloud computing.

Has >2.5 petabytes of genomic, epigenomic, transcriptomic, and proteomic data from >10k patients across 33 cancer types. Raw data is under controlled access, but derived data is openly accessible.

A knowledge resource aiming to describe all cell lines used in biomedical research. Users can browse the cell lines by group.

A manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity, and genomic data to enable the translation of information into effective new drugs.

A meta-analysis resource showing changes in plasma proteins that occur during COVID-19.

Contains information related to avian influenza, including a distribution map of confirmed human cases, as well as guidelines for surveillance.

Contains open datasets related to tuberculosis, including an atlas showing the distribution of reported cases across Europe.

A browser for vertebrate genomes. Supports research in evolution, transcriptional regulation, and sequence variation. It is part of the Ensembl project, which also includes Ensembl Genomes.

A browser for invertebrate genomes that enables comparative analysis, data mining, and visualisation. Information is available for viruses, metazoa, protists, plants, fungi, and bacteria.

MIC distributions include collated data from multiple sources, geographical areas and time periods and can never be used to infer rates of resistance.

The central hub for data generated within the EU-OPENSCREEN network. The network collaborates with external users to develop novel molecular tool compounds and early therapeautic candidate molecules.

The GLASS dashboard presents global antimicrobial use (AMU) and resistance (AMR) data for countries, territories, and areas (CTAs) that were enrolled in GLASS by the end of 2024, by means of interactive visualisations.

A molecular atlas of human prenatal development, describing every cell type in detail and showing their spatial and temporal distributions in three dimensions.

Brings together multiple types of infectious disease data to improve the diagnosis and treatment of patients in the clinic. Access to the data held in the IDDO data repository has to be requested.

A database of orthologs between 640 species, including inparalogs for both protein domains and full-length proteins.

Metabolic Atlas is a web platform integrating open-source genome scale metabolic models (GEMs) for easy browsing and analysis.

A public, open source database detailing protein-protein interactions that are experimentally verified. The interactions have been mined from scientific literature by expert curators.

The mOTUs (MG-based Operational Taxonomic Units) approach leverages well-established universal, single-copy, protein-coding marker genes to profile microbial abundances in shotgun metagenomic data.

A set of databases related to health and welfare from the National Board of Health and Welfare. This Swedish governmental agency is responsible for ensuring high-quality health and social care.

An open-source project to harness the scientific and public health potential of pathogen genome data.

As a collaboration tool, OSF helps research teams work on projects privately or make the entire project publicly accessible for broad dissemination.

Provides access to high-quality datasets related to rare diseases and orphan drugs. The data is available in a reusable and computable format.

Pathoplexus is a open-source database that makes it easier for researchers and public health workers to share, review, and act on viral pathogen genomic data.

Links to multiple data sources, including quality registers and KIARVA (an open-source immunology database).

A repository in which data on biological macromolecular structures can be deposited. A founding member of the worldwide Protein Data Bank (PDB), and works to collate, maintain, and provide access to PDB.

The Public Health Agency of Sweden (Folkhälsomyndigheten, FoHM) is responsible for issues related to public health. It collates and collects data on diseases that pose a threat to public health.

PubMLST hosts a collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 130 different microbial species and genera.

A graphical map of known biological processes and pathways. Provides tools to visualise, interpret, and analyse pathways to support research. Used for genome analysis, modelling, and systems biology.

Reference Sequence (RefSeq) collection provides a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins.

A list of Swedish registry-based data sources, maintained by the Swedish Research Council. Users can link data from multiple registers, including healthcare records, biobanks, and research data.

Researchdata.se is a national web portal where you can find, share, and reuse research data from a wide range of research fields. You can also find helpful advice and recommendations on managing research data.

A comprehensive online resource for quality-checked ribosomal RNA (rRNA) data. Includes aligned small and large subunits of rRNA from all three domains of life (archea, bacteria, eukarya).

Statistics Sweden has a large amount of data available for everyone to use free of charge under open licences. It includes geodata, public data, and data from different sectors.

Database of known and predicted protein-protein interactions, including both direct and indirect associations. Data is aggregated from multiple sources, e.g. existing databases and computer modelling.

A collection of resources centred around the subcellular localisation of proteins.

Organisations can share and download data related to data-driven development and innovation. It is created by Myndigheten for Digital Förvaltning (DIGG). Multiple types of data are available.

Swedres-Svarm is a report on Swedish Antibiotic Sales and Resistance in Human Medicine (Swedres) and Swedish Veterinary Antibiotic Resistance Monitoring (Svarm).

A website developed to make genomic datasets more findable and accessible.

An automated protein structure homology server. Protein sequences for 13 core species are modelled weekly. The aim of this database is to make protein modelling is accessible to researchers worldwide.

The Human Protein Atlas is a Sweden-based program initiated in 2003 with the aim to map all the human proteins in cells, tissues, and organs .

A large-scale biomedical database including biological and clinical data from 500K participants in the UK. Applications to access the data are welcomed from researchers anywhere in the world.

Aggregation of data from multiple genomic and other large datasets related to eukaryotic pathogens and invertebrate disease vectors. Includes data on many emerging and re-emerging infectious disease.

General purpose repository, Built and developed by researchers, to ensure that everyone can join in Open Science.